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Created attachment 2038 [details]
When you remove a file (content) via Finder, it no longer appear "red" in the file list.
Only when you highlight the missing file in MD does it appear. See the before and after highlight screenshots I have attached.
Installation UUID: 438ac2b5-07c9-45e7-a8ce-eac5ad86371d
Mono 2.10.9 (tarball)
Package version: 210090011
Apple Developer Tools:
Xcode 4.3.2 (1177)
Mono for Android: 126.96.36.199493563
Android SDK: /Users/vink/Library/Developer/Xamarin/android-sdk-mac_x86
Supported Android versions:
Version: 1.6 ApiLevel: 4
Version: 2.1 ApiLevel: 7
Version: 2.2 ApiLevel: 8
Version: 2.3 ApiLevel: 10
Version: 3.1 ApiLevel: 12
Version: 4.0 ApiLevel: 14
Version: 4.0.3 ApiLevel: 15
Java SDK: /usr/bin
Release ID: 30003001
Git revision: 1b6ffb8235519a006d51afd98014ad20186cfd1b-dirty
Build date: 2012-06-08 08:39:08+0000
Xamarin addins: 62ad7268d38c2ece7e00dc32960bd3bdab8fec38
Mac OS X 10.7.4
Darwin mac.local 11.4.0 Darwin Kernel Version 11.4.0
Mon Apr 9 19:32:15 PDT 2012
Created attachment 2039 [details]
Highlighted now appears red
As of the newest MonoDevelop the problem still exists.
MonoDevelop tracks file changes to some extent, but it can't track all changes done in the file system. If you want to update the tree, you can use the Refresh command.